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Fat1 FAT atypical cadherin 1 [ Mus musculus (house mouse) ]

Gene ID: 14107, updated on 5-Mar-2024

Summary

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Official Symbol
Fat1provided by MGI
Official Full Name
FAT atypical cadherin 1provided by MGI
Primary source
MGI:MGI:109168
See related
Ensembl:ENSMUSG00000070047 AllianceGenome:MGI:109168
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fath; mFat1; 2310038E12Rik
Summary
Involved in epithelial cell morphogenesis; establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis; and lens development in camera-type eye. Acts upstream of or within actin filament organization; cell-cell adhesion; and establishment or maintenance of cell polarity. Located in several cellular components, including apical plasma membrane; filopodium; and lamellipodium. Is active in plasma membrane. Is expressed in several structures, including alimentary system; central nervous system; embryo ectoderm; embryo mesenchyme; and sensory organ. Used to study facioscapulohumeral muscular dystrophy and nephrotic syndrome. Orthologous to human FAT1 (FAT atypical cadherin 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in limb E14.5 (RPKM 20.3), colon adult (RPKM 15.5) and 24 other tissues See more
Orthologs
human all
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Genomic context

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Location:
8 B1.1; 8 24.81 cM
Exon count:
34
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (45386137..45505294)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (44933100..45052257)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene dynein light chain 1, cytoplasmic-like Neighboring gene STARR-seq mESC enhancer starr_21340 Neighboring gene STARR-seq mESC enhancer starr_21342 Neighboring gene STARR-seq mESC enhancer starr_21343 Neighboring gene STARR-seq mESC enhancer starr_21344 Neighboring gene STARR-seq mESC enhancer starr_21345 Neighboring gene STARR-seq mESC enhancer starr_21346 Neighboring gene STARR-seq mESC enhancer starr_21347 Neighboring gene STARR-seq mESC enhancer starr_21348 Neighboring gene predicted gene, 30397 Neighboring gene STARR-seq mESC enhancer starr_21350 Neighboring gene STARR-seq mESC enhancer starr_21351 Neighboring gene STARR-seq mESC enhancer starr_21352 Neighboring gene STARR-seq mESC enhancer starr_21353 Neighboring gene STARR-seq mESC enhancer starr_21356 Neighboring gene STARR-seq mESC enhancer starr_21359 Neighboring gene STARR-seq mESC enhancer starr_21360 Neighboring gene STARR-seq mESC enhancer starr_21361 Neighboring gene predicted gene 9908 Neighboring gene STARR-seq mESC enhancer starr_21364 Neighboring gene cDNA sequence AY512931 Neighboring gene melatonin receptor 1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Effects of cyclic tensile strain and microgravity on the distribution of actin fiber and Fat1 cadherin in murine articular chondrocytes. Hatakeyama J, et al. J Biomech, 2021 Dec 2. PMID 34627073
  2. Control of mitochondrial function and cell growth by the atypical cadherin Fat1. Cao LL, et al. Nature, 2016 Nov 24. PMID 27828948, Free PMC Article
  3. Cloning and expression throughout mouse development of mfat1, a homologue of the Drosophila tumour suppressor gene fat. Cox B, et al. Dev Dyn, 2000 Mar. PMID 10741417
  4. Expression and function of the atypical cadherin FAT1 in chronic liver disease. Valletta D, et al. Biochem Biophys Res Commun, 2012 Sep 28. PMID 22959770
  5. Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes. Ringel AR, et al. Cell, 2022 Sep 29. PMID 36179666, Free PMC Article

See all (48) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. FAT1 inhibits AML autophagy and proliferation via downregulating ATG4B expression.
    Title: FAT1 inhibits AML autophagy and proliferation via downregulating ATG4B expression.
  2. n-3 Polyunsaturated Fatty Acids Modulate LPS-Induced ARDS and the Lung-Brain Axis of Communication in Wild-Type versus Fat-1 Mice Genetically Modified for Leukotriene B4 Receptor 1 or Chemerin Receptor 23 Knockout.
    Title: n-3 Polyunsaturated Fatty Acids Modulate LPS-Induced ARDS and the Lung-Brain Axis of Communication in Wild-Type versus Fat-1 Mice Genetically Modified for Leukotriene B4 Receptor 1 or Chemerin Receptor 23 Knockout.
  3. Astrocyte-intrinsic and -extrinsic Fat1 activities regulate astrocyte development and angiogenesis in the retina.
    Title: Astrocyte-intrinsic and -extrinsic Fat1 activities regulate astrocyte development and angiogenesis in the retina.
  4. Postnatal expression profiles of atypical cadherin FAT1 suggest its role in autism.
    Title: Postnatal expression profiles of atypical cadherin FAT1 suggest its role in autism.
  5. Effects of cyclic tensile strain and microgravity on the distribution of actin fiber and Fat1 cadherin in murine articular chondrocytes.
    Title: Effects of cyclic tensile strain and microgravity on the distribution of actin fiber and Fat1 cadherin in murine articular chondrocytes.
  6. Fat1 deletion promotes hybrid EMT state, tumour stemness and metastasis.
    Title: Fat1 deletion promotes hybrid EMT state, tumour stemness and metastasis.
  7. coordinates the coupling of muscular and neuronal morphogenesis by playing distinct but complementary actions in several cell types
    Title: Tissue-specific activities of the Fat1 cadherin cooperate to control neuromuscular morphogenesis.
  8. studies suggest that Fat1 controls mitochondrial activity to restrain cell growth during the reparative, proliferative state induced by vascular injury. Given recent reports linking Fat1 to cancer, abnormal kidney and muscle development, and neuropsychiatric disease, this Fat1 function may have importance in other settings of altered cell growth and metabolism
    Title: Control of mitochondrial function and cell growth by the atypical cadherin Fat1.
  9. Fat1 deletion in podocytes induces abnormal glomerular filtration barrier development leading to podocyte foot process effacement. Fat1 knockdown in renal tubular cells reduces migration, decreases active RAC1/CDC42 and induces defects in lumen formation.
    Title: FAT1 mutations cause a glomerulotubular nephropathy.
  10. Fat1 interacts with Fat4 to regulate neural tube closure, neural progenitor proliferation and apical constriction during mouse brain development.
    Title: Fat1 interacts with Fat4 to regulate neural tube closure, neural progenitor proliferation and apical constriction during mouse brain development.
Submit: New GeneRIF Correction See all GeneRIFs (17)

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within actin filament organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in camera-type eye development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in camera-type eye morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in cell-cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within cell-cell adhesion IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in epithelial cell morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within establishment or maintenance of cell polarity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in establishment or maintenance of epithelial cell apical/basal polarity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in lens development in camera-type eye IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of vascular associated smooth muscle cell migration ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in apical plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cell junction IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cell-cell junction ISO
Inferred from Sequence Orthology
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in filopodium IDA
Inferred from Direct Assay
more info
 PubMed 
located_in lamellipodium IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  
located_in perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
protocadherin Fat 1
Names
FAT tumor suppressor homolog 1
fat 1 cadherin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081286.3 → NP_001074755.2  protocadherin Fat 1 precursor

    See identical proteins and their annotated locations for NP_001074755.2

    Status: VALIDATED

    Source sequence(s)
    AC119214, AC158352
    Consensus CDS
    CCDS52547.1
    UniProtKB/TrEMBL
    F2Z4A3, Q9QXA3
    Related
    ENSMUSP00000096394.4, ENSMUST00000098796.10
    Conserved Domains (5) summary
    cd11304
    Location:3236 → 3333
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:3856 → 3987
    LamG; Laminin G domain
    cd00054
    Location:4129 → 4165
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:4095 → 4125
    EGF; EGF-like domain
    cl29226
    Location:278 → 357
    Cadherin; Cadherin domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    45386137..45505294
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006509267.4 → XP_006509330.1  protocadherin Fat 1 isoform X1

    See identical proteins and their annotated locations for XP_006509330.1

    UniProtKB/TrEMBL
    A0A1L1SQU7, Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:3259 → 3356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:3879 → 4010
    LamG; Laminin G domain
    cd00054
    Location:4152 → 4188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:4118 → 4148
    EGF; EGF-like domain
    cl29226
    Location:278 → 357
    Cadherin; Cadherin domain

  2. XM_006509270.4 → XP_006509333.1  protocadherin Fat 1 isoform X2

    UniProtKB/TrEMBL
    Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:3259 → 3356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:3879 → 4010
    LamG; Laminin G domain
    cd00054
    Location:4152 → 4188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:4118 → 4148
    EGF; EGF-like domain
    cl29226
    Location:278 → 357
    Cadherin; Cadherin domain

  3. XM_006509272.4 → XP_006509335.1  protocadherin Fat 1 isoform X4

    UniProtKB/TrEMBL
    Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:3259 → 3356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:3879 → 4010
    LamG; Laminin G domain
    cd00054
    Location:4152 → 4188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:4118 → 4148
    EGF; EGF-like domain
    cl29226
    Location:278 → 357
    Cadherin; Cadherin domain

  4. XM_006509273.4 → XP_006509336.1  protocadherin Fat 1 isoform X5

    UniProtKB/TrEMBL
    Q9QXA3
    Conserved Domains (4) summary
    cd11304
    Location:3259 → 3356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:3879 → 4010
    LamG; Laminin G domain
    cd00054
    Location:4115 → 4151
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl29226
    Location:278 → 357
    Cadherin; Cadherin domain

  5. XM_036153756.1 → XP_036009649.1  protocadherin Fat 1 isoform X7

    UniProtKB/TrEMBL
    Q9QXA3
    Conserved Domains (4) summary
    cd11304
    Location:3259 → 3356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:3879 → 4010
    LamG; Laminin G domain
    cd00054
    Location:4115 → 4151
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl29226
    Location:278 → 357
    Cadherin; Cadherin domain

  6. XM_017312564.2 → XP_017168053.1  protocadherin Fat 1 isoform X8

    UniProtKB/TrEMBL
    Q9QXA3
    Conserved Domains (4) summary
    cd11304
    Location:3259 → 3356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:3879 → 4010
    LamG; Laminin G domain
    cd00054
    Location:4115 → 4151
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl29226
    Location:278 → 357
    Cadherin; Cadherin domain

  7. XM_006509271.4 → XP_006509334.1  protocadherin Fat 1 isoform X3

    UniProtKB/TrEMBL
    Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:3236 → 3333
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:3856 → 3987
    LamG; Laminin G domain
    cd00054
    Location:4129 → 4165
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:4095 → 4125
    EGF; EGF-like domain
    cl29226
    Location:278 → 357
    Cadherin; Cadherin domain

  8. XM_006509277.4 → XP_006509340.1  protocadherin Fat 1 isoform X10

    UniProtKB/TrEMBL
    A0A087WRT4, Q9QXA3
    Related
    ENSMUSP00000140765.3, ENSMUST00000189017.8
    Conserved Domains (5) summary
    cd11304
    Location:3236 → 3333
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:3856 → 3987
    LamG; Laminin G domain
    cd00054
    Location:4129 → 4165
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:4095 → 4125
    EGF; EGF-like domain
    cl29226
    Location:278 → 357
    Cadherin; Cadherin domain

  9. XM_006509276.5 → XP_006509339.1  protocadherin Fat 1 isoform X9

    See identical proteins and their annotated locations for XP_006509339.1

    UniProtKB/TrEMBL
    Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:3259 → 3356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:3879 → 4010
    LamG; Laminin G domain
    cd00054
    Location:4152 → 4188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:4118 → 4148
    EGF; EGF-like domain
    cl29226
    Location:278 → 357
    Cadherin; Cadherin domain

  10. XM_030243288.2 → XP_030099148.1  protocadherin Fat 1 isoform X1

    UniProtKB/TrEMBL
    A0A1L1SQU7, Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:3259 → 3356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:3879 → 4010
    LamG; Laminin G domain
    cd00054
    Location:4152 → 4188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:4118 → 4148
    EGF; EGF-like domain
    cl29226
    Location:278 → 357
    Cadherin; Cadherin domain

  11. XM_011242173.4 → XP_011240475.1  protocadherin Fat 1 isoform X1

    See identical proteins and their annotated locations for XP_011240475.1

    UniProtKB/TrEMBL
    A0A1L1SQU7, Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:3259 → 3356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:3879 → 4010
    LamG; Laminin G domain
    cd00054
    Location:4152 → 4188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:4118 → 4148
    EGF; EGF-like domain
    cl29226
    Location:278 → 357
    Cadherin; Cadherin domain

  12. XM_036153754.1 → XP_036009647.1  protocadherin Fat 1 isoform X1

    UniProtKB/TrEMBL
    A0A1L1SQU7, Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:3259 → 3356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:3879 → 4010
    LamG; Laminin G domain
    cd00054
    Location:4152 → 4188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:4118 → 4148
    EGF; EGF-like domain
    cl29226
    Location:278 → 357
    Cadherin; Cadherin domain

  13. XM_030243287.2 → XP_030099147.1  protocadherin Fat 1 isoform X1

    UniProtKB/TrEMBL
    A0A1L1SQU7, Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:3259 → 3356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:3879 → 4010
    LamG; Laminin G domain
    cd00054
    Location:4152 → 4188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:4118 → 4148
    EGF; EGF-like domain
    cl29226
    Location:278 → 357
    Cadherin; Cadherin domain

  14. XM_006509268.5 → XP_006509331.1  protocadherin Fat 1 isoform X1

    See identical proteins and their annotated locations for XP_006509331.1

    UniProtKB/TrEMBL
    A0A1L1SQU7, Q9QXA3
    Related
    ENSMUSP00000149194.2, ENSMUST00000215588.2
    Conserved Domains (5) summary
    cd11304
    Location:3259 → 3356
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:3879 → 4010
    LamG; Laminin G domain
    cd00054
    Location:4152 → 4188
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:4118 → 4148
    EGF; EGF-like domain
    cl29226
    Location:278 → 357
    Cadherin; Cadherin domain

  15. XM_036153755.1 → XP_036009648.1  protocadherin Fat 1 isoform X3

    UniProtKB/TrEMBL
    Q9QXA3
    Conserved Domains (5) summary
    cd11304
    Location:3236 → 3333
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:3856 → 3987
    LamG; Laminin G domain
    cd00054
    Location:4129 → 4165
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:4095 → 4125
    EGF; EGF-like domain
    cl29226
    Location:278 → 357
    Cadherin; Cadherin domain

RNA

  1. XR_001778405.2 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_010179.1: Suppressed sequence

    Description
    NM_010179.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein Strain
Heading Accession and Version

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