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MAP2K4P1 mitogen-activated protein kinase kinase 4 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 139201, updated on 16-Jan-2024

Summary

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Official Symbol
MAP2K4P1provided by HGNC
Official Full Name
mitogen-activated protein kinase kinase 4 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:43837
See related
Ensembl:ENSG00000293351 AllianceGenome:HGNC:43837
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in brain (RPKM 1.1), thyroid (RPKM 0.4) and 24 other tissues See more
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Genomic context

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Location:
Xq13.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (73524275..73563085, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (71957638..71996447, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (72744111..72782921, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chrX:72666583-72667248 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:72667249-72667913 Neighboring gene NANOG hESC enhancer GRCh37_chrX:72673827-72674431 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:72701495-72702694 Neighboring gene caudal type homeobox 4 Neighboring gene mortality factor 4 like 1 pseudogene 6 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:72775946-72776585 Neighboring gene ribosomal protein L7 pseudogene 53 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20905 Neighboring gene cysteine rich hydrophobic domain 1 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:72891741-72891916 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:72948368-72948916 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:72987649-72988534 Neighboring gene selenophosphate synthetase 1 pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Expression and mutation analyses of MKK4, a candidate tumour suppressor gene encoded by chromosome 17p, in human gastric adenocarcinoma. Chae KS, et al. Eur J Cancer, 2002 Oct. PMID 12376211
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_029423.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK056535, AL450108
    Related
    ENST00000602584.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    73524275..73563085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    71957638..71996447 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_001305.1: Suppressed sequence

    Description
    NG_001305.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.

  2. NG_026719.1: Suppressed sequence

    Description
    NG_026719.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
Nucleotide Protein
Heading Accession and Version

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