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MRPS16P1 mitochondrial ribosomal protein S16 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 137406, updated on 10-Oct-2023

Summary

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Official Symbol
MRPS16P1provided by HGNC
Official Full Name
mitochondrial ribosomal protein S16 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:29732
See related
AllianceGenome:HGNC:29732
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
8q21.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (91917345..91918120)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (93042437..93043212)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (92929573..92930348)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs1601 Neighboring gene RN7SK pseudogene 231 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:92732173-92732880 Neighboring gene NANOG hESC enhancer GRCh37_chr8:92735149-92735650 Neighboring gene NANOG hESC enhancer GRCh37_chr8:92735703-92736204 Neighboring gene VISTA enhancer hs669 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:92828759-92829276 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:92881686-92882571 Neighboring gene proline rich 13 pseudogene 7 Neighboring gene RUNX1 partner transcriptional co-repressor 1 Neighboring gene VISTA enhancer hs1658 Neighboring gene VISTA enhancer hs1599 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:93083931-93084430 Neighboring gene Sharpr-MPRA regulatory region 8891 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:93143901-93144445 Neighboring gene ribosomal protein S26 pseudogene 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome. Zhang Z, et al. Genomics, 2003 May. PMID 12706105

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_002648.3 

    Range
    38..813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    91917345..91918120
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    93042437..93043212
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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