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BTF3P13 basic transcription factor 3 pseudogene 13 [ Homo sapiens (human) ]

Gene ID: 132556, updated on 10-Oct-2023

Summary

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Official Symbol
BTF3P13provided by HGNC
Official Full Name
basic transcription factor 3 pseudogene 13provided by HGNC
Primary source
HGNC:HGNC:1128
See related
MIM:603739; AllianceGenome:HGNC:1128
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BTF3L3; HUMBTFD
Summary
This locus defines a putative member of the BTF3 family of transcription factors and is thought to represent a pseudogene. [provided by RefSeq, Jul 2008]
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Genomic context

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Location:
4q23
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (98740625..98741496)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (102055574..102056445)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (99661776..99662647)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112267901 Neighboring gene TSPAN5 divergent transcript Neighboring gene CRISPRi-validated cis-regulatory element chr4.2289 Neighboring gene CRISPRi-validated cis-regulatory element chr4.2290 Neighboring gene mitochondrial import receptor subunit TOM7 homolog Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:99668606-99669156 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:99669157-99669707 Neighboring gene uncharacterized LOC105377343 Neighboring gene Sharpr-MPRA regulatory region 12926 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:99813327-99813541 Neighboring gene eukaryotic translation initiation factor 4E Neighboring gene tubulin folding cofactor A pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic structure of the putative BTF3 transcription factor. Kanno M, et al. Gene, 1992 Aug 15. PMID 1386332

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • basic transcription factor 3, like 3
  • basic transcription factor 3, pseudogene
  • basic transcription factor 3-like 3, pseudogene
  • lambda h33

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_006070.4 

    Range
    101..972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    98740625..98741496
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    102055574..102056445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001210.2: Suppressed sequence

    Description
    NM_001210.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

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