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RPS11P1 ribosomal protein S11 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 128718, updated on 10-Oct-2023

Summary

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Official Symbol
RPS11P1provided by HGNC
Official Full Name
ribosomal protein S11 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:16553
See related
Ensembl:ENSG00000235544 AllianceGenome:HGNC:16553
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
dJ1060K6.1; RPS11_3_1684
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Genomic context

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Location:
20p12.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (11345383..11345855, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (11389038..11389510, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (11326031..11326503, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372528 Neighboring gene NANOG hESC enhancer GRCh37_chr20:11229310-11229856 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:11241778-11242278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:11242279-11242779 Neighboring gene uncharacterized LOC124904960 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:11247394-11248593 Neighboring gene Sharpr-MPRA regulatory region 8773 Neighboring gene uncharacterized LOC339593 Neighboring gene uncharacterized LOC105372529 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17548 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:11517622-11518319 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:11589151-11589652 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:11589653-11590152 Neighboring gene LIN28A pseudogene 3 Neighboring gene phosphoglycerate mutase 3, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_000972.3 

    Range
    101..573
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    11345383..11345855 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    11389038..11389510 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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