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LOC127892556 H3K4me1 hESC enhancer GRCh37_chr20:5807499-5808000 [ Homo sapiens (human) ]

Gene ID: 127892556, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127892556
Gene description
H3K4me1 hESC enhancer GRCh37_chr20:5807499-5808000
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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Location:
chromosome: 20
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (5826853..5827354)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (5867205..5867707)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904864 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:5637190-5637690 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:5637691-5638191 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:5668750-5669250 Neighboring gene Sharpr-MPRA regulatory region 5332 Neighboring gene uncharacterized LOC105372514 Neighboring gene Sharpr-MPRA regulatory region 14731 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17527 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17528 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17529 Neighboring gene shieldin complex subunit 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17530 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17531 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17532 Neighboring gene MPRA-validated peak4135 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr20:5872947-5873157 Neighboring gene RNA, U1 small nuclear 55, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12658 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12659 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:5904456-5905655 Neighboring gene chromogranin B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_148044.1 

    Range
    101..602
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    5826853..5827354
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    5867205..5867707
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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