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LOC127891136 H3K4me1 hESC enhancer GRCh37_chr19:30521325-30521824 [ Homo sapiens (human) ]

Gene ID: 127891136, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127891136
Gene description
H3K4me1 hESC enhancer GRCh37_chr19:30521325-30521824
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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Location:
chromosome: 19
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (30030418..30030917)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (32550828..32551327)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr19:30418723-30419224 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr19:30419225-30419724 Neighboring gene peptidylprolyl isomerase A pseudogene 58 Neighboring gene URI1 prefoldin like chaperone Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14423 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10473 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14424 Neighboring gene ribosomal protein L9 pseudogene 32 Neighboring gene VISTA enhancer hs381 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10474 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14425 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14426 Neighboring gene TATA-box binding protein associated factor 9 pseudogene 3 Neighboring gene VISTA enhancer hs382 Neighboring gene uncharacterized LOC107985271 Neighboring gene VISTA enhancer hs721 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14427

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_141020.1 

    Range
    101..600
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    30030418..30030917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    32550828..32551327
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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