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LOC127888579 H3K4me1 hESC enhancer GRCh37_chr17:80694660-80695371 [ Homo sapiens (human) ]

Gene ID: 127888579, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127888579
Gene description
H3K4me1 hESC enhancer GRCh37_chr17:80694660-80695371
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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Location:
chromosome: 17
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (82736784..82737495)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (83611292..83612003)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929552 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9225 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9226 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9227 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:80687657-80688157 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:80692522-80693234 Neighboring gene fructosamine 3 kinase related protein Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:80693947-80694659 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:80701509-80702145 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9228 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9229 Neighboring gene Sharpr-MPRA regulatory region 591 Neighboring gene fructosamine 3 kinase Neighboring gene tubulin folding cofactor D Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13015 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:80747669-80748170 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:80751687-80752407 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:80786629-80787475 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:80795429-80795930 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:80802695-80803196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:80803197-80803696 Neighboring gene zinc finger protein 750 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13016 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:80807949-80808451 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:80817109-80817884 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13017 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9230 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:80824049-80824550 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:80824551-80825050 Neighboring gene uncharacterized LOC124904096 Neighboring gene TBCD intron CAGE-defined B cell enhancer

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_138166.1 

    Range
    101..812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    82736784..82737495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    83611292..83612003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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