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LOC127408036 H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:188255-188923 [ Homo sapiens (human) ]

Gene ID: 127408036, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127408036
Gene description
H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:188255-188923
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K27ac and H3K4me1 histone modifications. [provided by RefSeq, Oct 2022]
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Genomic context

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Location:
chromosome: 7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (188255..188923)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (288922..289590)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene TRIO and F-actin-binding protein-like Neighboring gene uncharacterized LOC105375115 Neighboring gene uncharacterized LOC124901806 Neighboring gene uncharacterized LOC124901808 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:195348-196325 Neighboring gene FAM20C golgi associated secretory pathway kinase Neighboring gene ReSE screen-validated silencer GRCh37_chr7:200334-200504 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:205256-205424 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:206083-206732 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:206733-207382 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:214209-214786 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:218347-219342 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:220337-221331 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:221332-222325 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:226080-226580 Neighboring gene G patch domain-containing protein 8-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_110004.1 

    Range
    101..769
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    188255..188923
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021159998.1 Reference GRCh38.p14 PATCHES

    Range
    163943..164611
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187558.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    147659..148327
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187653.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    180576..181244
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    288922..289590
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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