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LOC127274441 NANOG hESC enhancer GRCh37_chr2:112290355-112290856 [ Homo sapiens (human) ]

Gene ID: 127274441, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127274441
Gene description
NANOG hESC enhancer GRCh37_chr2:112290355-112290856
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer associates with the NANOG transcription factor. [provided by RefSeq, Oct 2022]
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Genomic context

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Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (111532778..111533279)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (111958541..111959042)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene MIR4435-2 host gene Neighboring gene uncharacterized LOC124906065 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:112244635-112245487 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:112252044-112253243 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:112289353-112289852 Neighboring gene serous ovarian cancer associated RNA Neighboring gene uncharacterized LOC124906066 Neighboring gene DBF4 pseudogene 2 Neighboring gene uncharacterized LOC105373559 Neighboring gene uncharacterized LOC107985933

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_096291.1 

    Range
    101..602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    111532778..111533279
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    111958541..111959042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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