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LOC127271424 H3K4me1 hESC enhancer GRCh37_chr1:208137516-208138045 [ Homo sapiens (human) ]

Gene ID: 127271424, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127271424
Gene description
H3K4me1 hESC enhancer GRCh37_chr1:208137516-208138045
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (207964171..207964700)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (207210914..207211443)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene MIR29B2 and MIR29C host gene Neighboring gene Sharpr-MPRA regulatory region 9321 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2453 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1775 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2454 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2455 Neighboring gene uncharacterized LOC148696 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2456 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2457 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1776 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2460 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2459 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2458 Neighboring gene uncharacterized LOC107985253 Neighboring gene NANOG hESC enhancer GRCh37_chr1:208091350-208091981 Neighboring gene CD34 molecule Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:208131807-208132308 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:208132309-208132808 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2461 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2462 Neighboring gene long intergenic non-protein coding RNA 2767 Neighboring gene plexin A2 Neighboring gene uncharacterized LOC105372887 Neighboring gene uncharacterized LOC124904499

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_093276.1 

    Range
    101..630
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    207964171..207964700
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    207210914..207211443
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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