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Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 [ Mus musculus (house mouse) ]

Gene ID: 12705, updated on 21-Apr-2024

Summary

Official Symbol
Cited1provided by MGI
Official Full Name
Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1provided by MGI
Primary source
MGI:MGI:108023
See related
Ensembl:ENSMUSG00000051159 AllianceGenome:MGI:108023
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Msg1
Summary
Enables chromatin binding activity. Involved in several processes, including negative regulation of osteoblast differentiation; positive regulation of macromolecule metabolic process; and response to interferon-gamma. Acts upstream of or within several processes, including embryonic placenta development; melanocyte differentiation; and vasculogenesis. Located in cytosol and nucleus. Is expressed in several structures, including brain; early conceptus; embryo mesenchyme; genitourinary system; and heart. Orthologous to human CITED1 (Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in placenta adult (RPKM 119.3), mammary gland adult (RPKM 29.1) and 6 other tissues See more
Orthologs
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Genomic context

Location:
X D; X 45.25 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (101290984..101295787, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (102247378..102252181, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene ribosomal protein S4, X-linked Neighboring gene predicted gene 14859 Neighboring gene predicted gene 14858 Neighboring gene STARR-seq mESC enhancer starr_47671 Neighboring gene histone deacetylase 8 Neighboring gene predicted gene, 32262 Neighboring gene STARR-seq mESC enhancer starr_47673

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables LBD domain binding ISO
Inferred from Sequence Orthology
more info
 
enables chromatin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables co-SMAD binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
enables transcription coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables transcription coactivator activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in SMAD protein signal transduction ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within apoptotic process IEA
Inferred from Electronic Annotation
more info
 
involved_in brain development IEP
Inferred from Expression Pattern
more info
PubMed 
NOT involved_in branching involved in ureteric bud morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in embryonic axis specification ISO
Inferred from Sequence Orthology
more info
 
NOT involved_in kidney development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within labyrinthine layer development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in melanin biosynthetic process IDA
Inferred from Direct Assay
more info
PubMed 
involved_in melanocyte differentiation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in melanocyte differentiation IEP
Inferred from Expression Pattern
more info
PubMed 
NOT involved_in morphogenesis of an epithelium IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of neuron apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of osteoblast differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in nucleocytoplasmic transport ISO
Inferred from Sequence Orthology
more info
 
involved_in pigmentation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in pigmentation IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in placenta development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of gene expression IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in response to cAMP IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to cytokine IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to estrogen ISO
Inferred from Sequence Orthology
more info
 
involved_in response to insulin IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to interleukin-1 IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to interleukin-11 IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to interleukin-2 IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to interleukin-4 IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to interleukin-6 IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to interleukin-9 IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to lipopolysaccharide IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to parathyroid hormone IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to transforming growth factor beta ISO
Inferred from Sequence Orthology
more info
 
involved_in response to type II interferon IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within spongiotrophoblast layer development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in transforming growth factor beta receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within vasculogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
cbp/p300-interacting transactivator 1
Names
melanocyte-specific protein 1
NP_001263395.1
NP_001263402.1
NP_001263403.1
NP_031735.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001276466.1NP_001263395.1  cbp/p300-interacting transactivator 1 isoform a

    See identical proteins and their annotated locations for NP_001263395.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1, 2 and 3 encode the same isoform (a).
    Source sequence(s)
    AK148042, AL954850
    Consensus CDS
    CCDS30322.1
    UniProtKB/Swiss-Prot
    P97769
    UniProtKB/TrEMBL
    Q3UGA1
    Related
    ENSMUSP00000051789.4, ENSMUST00000050551.10
    Conserved Domains (1) summary
    pfam04487
    Location:89199
    CITED; CITED
  2. NM_001276473.1NP_001263402.1  cbp/p300-interacting transactivator 1 isoform a

    See identical proteins and their annotated locations for NP_001263402.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1, 2 and 3 encode the same isoform (a).
    Source sequence(s)
    AK148042, AL954850
    Consensus CDS
    CCDS30322.1
    UniProtKB/Swiss-Prot
    P97769
    UniProtKB/TrEMBL
    Q3UGA1
    Conserved Domains (1) summary
    pfam04487
    Location:89199
    CITED; CITED
  3. NM_001276474.1NP_001263403.1  cbp/p300-interacting transactivator 1 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (b) has a distinct N-terminus and is longer than isoform a.
    Source sequence(s)
    AK148042, AL954850, BC052030, CX237826
    UniProtKB/Swiss-Prot
    P97769
    UniProtKB/TrEMBL
    Q3UGA1
    Conserved Domains (1) summary
    pfam04487
    Location:117227
    CITED
  4. NM_007709.4NP_031735.1  cbp/p300-interacting transactivator 1 isoform a

    See identical proteins and their annotated locations for NP_031735.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2 and 3 encode the same isoform (a).
    Source sequence(s)
    AL954850, BC052030, BQ173936
    Consensus CDS
    CCDS30322.1
    UniProtKB/Swiss-Prot
    P97769
    UniProtKB/TrEMBL
    Q3UGA1
    Related
    ENSMUSP00000098890.4, ENSMUST00000101336.10
    Conserved Domains (1) summary
    pfam04487
    Location:89199
    CITED; CITED

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    101290984..101295787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)