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LINC03049 long intergenic non-protein coding RNA 3049 [ Homo sapiens (human) ]

Gene ID: 126568845, updated on 10-Oct-2023

Summary

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Official Symbol
LINC03049provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3049provided by HGNC
Primary source
HGNC:HGNC:56282
See related
Ensembl:ENSG00000271109
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
19q13.11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (34849051..34860654, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (37393628..37405226, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 599 Neighboring gene zinc finger protein 134 pseudogene Neighboring gene long intergenic non-protein coding RNA 1801 Neighboring gene zinc finger protein 396 pseudogene Neighboring gene long intergenic non-protein coding RNA 2965 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:35351359-35351924 Neighboring gene ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) pseudogene Neighboring gene long intergenic non-protein coding RNA 904

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A long non-coding RNA as a direct vitamin D target transcribed from the antisense strand of the human HSD17B2 locus. Kanemoto Y, et al. Biosci Rep, 2022 May 27. PMID 35510872, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

General gene information

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Other Names

  • CTC-523E23.11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_182281.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008555
    Related
    ENST00000657506.1

  2. NR_182282.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008555
    Related
    ENST00000653487.1

  3. NR_182283.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008555
    Related
    ENST00000655389.1

  4. NR_182284.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008555
    Related
    ENST00000665881.1

  5. NR_182285.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008555
    Related
    ENST00000661859.1

  6. NR_182286.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008555
    Related
    ENST00000603718.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    34849051..34860654 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    37393628..37405226 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases