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Cga glycoprotein hormones, alpha subunit [ Mus musculus (house mouse) ]

Gene ID: 12640, updated on 21-Apr-2024

Summary

Official Symbol
Cgaprovided by MGI
Official Full Name
glycoprotein hormones, alpha subunitprovided by MGI
Primary source
MGI:MGI:88390
See related
Ensembl:ENSMUSG00000028298 AllianceGenome:MGI:88390
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
HCG; LHA; FSHA; Tsha; aGSU; GPHA1; alphaSU; CG-alpha; GPHalpha; alphaGSU; alpha-GSU
Summary
Predicted to enable follicle-stimulating hormone activity. Acts upstream of or within several processes, including gonadotropin secretion; thyroid gland development; and thyroid hormone generation. Predicted to be located in extracellular region. Predicted to be part of follicle-stimulating hormone complex. Predicted to be active in extracellular space. Is expressed in brain; future pituitary; and retina nuclear layer. Orthologous to human CGA (glycoprotein hormones, alpha polypeptide). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

Location:
4 A5; 4 16.86 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (34893779..34907374)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (34893779..34907374)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 57497 Neighboring gene zinc finger protein 292 Neighboring gene STARR-positive B cell enhancer mm9_chr4:34767165-34767465 Neighboring gene tubulin, beta 6 pseudogene Neighboring gene STARR-seq mESC enhancer starr_09922 Neighboring gene STARR-seq mESC enhancer starr_09925 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:34833884-34833993 Neighboring gene STARR-seq mESC enhancer starr_09928 Neighboring gene STARR-seq mESC enhancer starr_09932 Neighboring gene pluripotency associated transcript 9 Neighboring gene ubiquitin protein ligase E3 component n-recognin 7 (putative) pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Endonuclease-mediated (2) 

Pathways from PubChem

General gene information

Markers

Clone Names

  • MGC107283

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables follicle-stimulating hormone activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables follicle-stimulating hormone activity ISO
Inferred from Sequence Orthology
more info
 
enables hormone activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within cellular response to hormone stimulus IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within developmental growth IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within follicle-stimulating hormone secretion IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within gonad development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within luteinizing hormone secretion IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of organ growth IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of organ growth IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of steroid biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of steroid biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of signaling receptor activity ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within thyroid gland development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in thyroid hormone generation IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within thyroid hormone generation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 
part_of follicle-stimulating hormone complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of follicle-stimulating hormone complex ISO
Inferred from Sequence Orthology
more info
 
part_of pituitary gonadotropin complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
glycoprotein hormones alpha chain
Names
FSH-alpha
LSH-alpha
TSH-alpha
anterior pituitary glycoprotein hormones common subunit alpha
follicle-stimulating hormone alpha chain
follitropin alpha chain
luteinizing hormone alpha chain
lutropin alpha chain
thyroid-stimulating hormone alpha chain
thyrotropin alpha chain

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009889.2NP_034019.1  glycoprotein hormones alpha chain precursor

    See identical proteins and their annotated locations for NP_034019.1

    Status: PROVISIONAL

    Source sequence(s)
    AL929565
    Consensus CDS
    CCDS18035.1
    UniProtKB/Swiss-Prot
    P01216, P11963, Q5M8P4
    UniProtKB/TrEMBL
    A0A0F7RQH1, A2AVN2
    Related
    ENSMUSP00000029975.4, ENSMUST00000029975.10
    Conserved Domains (1) summary
    pfam00236
    Location:26113
    Hormone_6; Glycoprotein hormone

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    34893779..34907374
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006537586.2XP_006537649.1  glycoprotein hormones alpha chain isoform X1

    See identical proteins and their annotated locations for XP_006537649.1

    UniProtKB/Swiss-Prot
    P01216, P11963, Q5M8P4
    UniProtKB/TrEMBL
    A0A0F7RQH1, A2AVN2
    Conserved Domains (1) summary
    pfam00236
    Location:26113
    Hormone_6; Glycoprotein hormone