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RPL22P1 ribosomal protein L22 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 125371, updated on 10-Oct-2023

Summary

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Official Symbol
RPL22P1provided by HGNC
Official Full Name
ribosomal protein L22 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:17998
See related
AllianceGenome:HGNC:17998
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL22_5_435
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Genomic context

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Location:
3q26.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (169483418..169484020, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (172267380..172267982, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (169201206..169201808, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene MDS1 and EVI1 complex locus Neighboring gene uncharacterized LOC105374206 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:169027108-169028307 Neighboring gene MECOM antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:169200343-169200843 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_66618 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:169281185-169282384 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_66711 Neighboring gene uncharacterized LOC124906301 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:169378582-169379302 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14873 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:169384421-169384937 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:169386901-169387402 Neighboring gene succinate dehydrogenase complex subunit D pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AML1 fusion transcripts in t(3;21) positive leukemia: evidence of molecular heterogeneity and usage of splicing sites frequently involved in the generation of normal AML1 transcripts. Sacchi N, et al. Genes Chromosomes Cancer, 1994 Dec. PMID 7533526
  2. The 3;21 translocation in myelodysplasia results in a fusion transcript between the AML1 gene and the gene for EAP, a highly conserved protein associated with the Epstein-Barr virus small RNA EBER 1. Nucifora G, et al. Proc Natl Acad Sci U S A, 1993 Aug 15. PMID 8395054, Free PMC Article
  3. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • EBER-associated protein pseudogene 1
  • Epstein-Barr virus small RNA-associated protein pseudogene 1
  • Epstein-Barr-encoded RNA-associated protein pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_009515.3 

    Range
    101..703
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    169483418..169484020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    172267380..172267982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases