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Cd83 CD83 antigen [ Mus musculus (house mouse) ]

Gene ID: 12522, updated on 21-Apr-2024

Summary

Official Symbol
Cd83provided by MGI
Official Full Name
CD83 antigenprovided by MGI
Primary source
MGI:MGI:1328316
See related
Ensembl:ENSMUSG00000015396 AllianceGenome:MGI:1328316
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Acts upstream of or within positive regulation of CD4-positive, alpha-beta T cell differentiation; regulation of cytokine production; and response to organic cyclic compound. Located in external side of plasma membrane. Is expressed in alimentary system; genitourinary system; hemolymphoid system gland; and nervous system. Orthologous to human CD83 (CD83 molecule). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in spleen adult (RPKM 24.2), thymus adult (RPKM 21.3) and 20 other tissues See more
Orthologs
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Genomic context

Location:
13 A4; 13 21.6 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (43938661..43956608)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (43785112..43803133)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52070 Neighboring gene STARR-seq mESC enhancer starr_34346 Neighboring gene predicted gene, 20751 Neighboring gene STARR-positive B cell enhancer ABC_E10790 Neighboring gene STARR-positive B cell enhancer ABC_E1874 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:43928236-43928453 Neighboring gene predicted gene, 33115 Neighboring gene predicted gene, 53797 Neighboring gene STARR-positive B cell enhancer ABC_E2405 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:43960137-43960246 Neighboring gene predicted gene, 33195

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001289915.2NP_001276844.1  CD83 antigen isoform 2 precursor

    See identical proteins and their annotated locations for NP_001276844.1

    Status: VALIDATED

    Source sequence(s)
    AC159983
    Conserved Domains (1) summary
    cl11960
    Location:23112
    Ig; Immunoglobulin domain
  2. NM_009856.4NP_033986.1  CD83 antigen isoform 1 precursor

    See identical proteins and their annotated locations for NP_033986.1

    Status: VALIDATED

    Source sequence(s)
    AC159983
    Consensus CDS
    CCDS26481.1
    UniProtKB/Swiss-Prot
    O88324
    UniProtKB/TrEMBL
    Q3T9H6
    Related
    ENSMUSP00000015540.3, ENSMUST00000015540.4
    Conserved Domains (1) summary
    cl11960
    Location:23118
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    43938661..43956608
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)