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LOC124901221 small nucleolar RNA U3 [ Homo sapiens (human) ]

Gene ID: 124901221, updated on 10-Oct-2023

Summary

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Gene symbol
LOC124901221
Gene description
small nucleolar RNA U3
See related
Ensembl:ENSG00000221043
Gene type
snoRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC124901221 in Genome Data Viewer
Location:
5q32
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (149695748..149695959, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (150232295..150232506, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor 37 Neighboring gene Sharpr-MPRA regulatory region 10925 Neighboring gene RNA, U6 small nuclear 588, pseudogene Neighboring gene MPRA-validated peak5533 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23380 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23381 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23382 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:149011522-149012721 Neighboring gene uncharacterized LOC124901104 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82262 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23383 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23384 Neighboring gene uncharacterized LOC105378224 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:149092310-149092945 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:149095860-149096110 Neighboring gene RNA, 7SL, cytoplasmic 868, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    149695748..149695959 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007059180.1 RNA Sequence

    Related
    ENST00000408116.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    150232295..150232506 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076374.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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