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LOC124900186 small nucleolar RNA SNORD65 [ Homo sapiens (human) ]

Gene ID: 124900186, updated on 10-Oct-2023

Summary

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Gene symbol
LOC124900186
Gene description
small nucleolar RNA SNORD65
See related
Ensembl:ENSG00000212191
Gene type
snoRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC124900186 in Genome Data Viewer
Location:
4q34.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (178685886..178685956, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (182025066..182025136, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:179300357-179300857 Neighboring gene ribosomal protein L19 pseudogene 8 Neighboring gene RNA, 5S ribosomal pseudogene 173 Neighboring gene NANOG hESC enhancer GRCh37_chr4:179674014-179674924 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_76488 Neighboring gene uncharacterized LOC105377563 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:179838787-179839346 Neighboring gene MPRA-validated peak5156 silencer Neighboring gene MPRA-validated peak5157 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:180086998-180087709 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:180087710-180088420 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:180091265-180091975 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:180385948-180387147 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_76514 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_76540 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:180630948-180631634 Neighboring gene NANOG hESC enhancer GRCh37_chr4:180647508-180648029 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15820 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22172 Neighboring gene uncharacterized LOC124900818 Neighboring gene uncharacterized LOC124900623

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    178685886..178685956 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007058533.1 RNA Sequence

    Related
    ENST00000390889.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    182025066..182025136 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075394.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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