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LNMICC lncRNA associated with lymph node metastasis in cervical cancer [ Homo sapiens (human) ]

Gene ID: 123706532, updated on 10-Oct-2023

Summary

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Official Symbol
LNMICCprovided by HGNC
Official Full Name
lncRNA associated with lymph node metastasis in cervical cancerprovided by HGNC
Primary source
HGNC:HGNC:56001
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
8q21.13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (81275399..81281424, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (81706977..81713002, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375924 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27579 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19327 Neighboring gene NANOG hESC enhancer GRCh37_chr8:82108601-82109175 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27580 Neighboring gene ubiquitin conjugating enzyme E2 H pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:82192414-82193248 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:82193249-82194083 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27581 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27582 Neighboring gene fatty acid binding protein 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27583 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:82243330-82243830 Neighboring gene uncharacterized LOC105375925 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:82262688-82263887 Neighboring gene uncharacterized LOC105375926

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. LNMICC Promotes Nodal Metastasis of Cervical Cancer by Reprogramming Fatty Acid Metabolism. Shang C, et al. Cancer Res, 2018 Feb 15. PMID 29229603

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186603.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009902

  2. NR_186604.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009902

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    81275399..81281424 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    81706977..81713002 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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