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LINC02945 long intergenic non-protein coding RNA 2945 [ Homo sapiens (human) ]

Gene ID: 123464519, updated on 26-Oct-2023

Summary

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Official Symbol
LINC02945provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2945provided by HGNC
Primary source
HGNC:HGNC:55960
See related
Ensembl:ENSG00000249815
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
4q25
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (111803466..112112270, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (115111845..115420629, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:112596428-112597128 Neighboring gene uncharacterized LOC105377367 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_72110 Neighboring gene VISTA enhancer hs926 Neighboring gene NANOG hESC enhancer GRCh37_chr4:112729243-112729823 Neighboring gene uncharacterized LOC105377369 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15631 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15632 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:112982078-112982291 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21819 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:113003830-113005029 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:113007923-113008491 Neighboring gene coiled-coil domain containing 34 pseudogene 1 Neighboring gene tubulin beta 8 class VIII pseudogene 3 Neighboring gene uncharacterized LOC105377370 Neighboring gene ribosomal protein S12 pseudogene 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

General gene information

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Clone Names

  • AC004704.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186680.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093663, AC139718

  2. NR_186681.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093663, AC139718
    Related
    ENST00000679735.1

  3. NR_186682.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093663, AC139718

  4. NR_186683.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093663, AC139718

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    111803466..112112270 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    115111845..115420629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases