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C4bp-ps1 complement component 4 binding protein, pseudogene 1 [ Mus musculus (house mouse) ]

Gene ID: 12270, updated on 8-Feb-2024

Summary

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Official Symbol
C4bp-ps1provided by MGI
Official Full Name
complement component 4 binding protein, pseudogene 1provided by MGI
Primary source
MGI:MGI:99594
See related
AllianceGenome:MGI:99594
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C4bpb
Expression
Biased expression in testis adult (RPKM 1.8), bladder adult (RPKM 0.4) and 13 other tissues See more
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Genomic context

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Location:
1 E4; 1 56.89 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (130597939..130609308, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (130670202..130681571, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene zona pellucida 3 receptor Neighboring gene STARR-seq mESC enhancer starr_02199 Neighboring gene predicted gene, 23623 Neighboring gene complement component 4 binding protein Neighboring gene STARR-seq mESC enhancer starr_02200 Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 Neighboring gene STARR-positive B cell enhancer ABC_E1230 Neighboring gene STARR-seq mESC enhancer starr_02204 Neighboring gene YOD1 deubiquitinase Neighboring gene expressed sequence AA986860 Neighboring gene predicted gene 28857

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The gene coding for the beta-chain of C4b-binding protein (C4BPB) has become a pseudogene in the mouse. Rodríguez de Córdoba S, et al. Genomics, 1994 Jun. PMID 7959726
  2. The gene map of the Norway rat (Rattus norvegicus) and comparative mapping with mouse and man. Levan G, et al. Genomics, 1991 Jul. PMID 1889815
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Potential readthrough

Included gene: Pfkfb2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028304.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139231, BB728650

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    130597939..130609308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_001350.2: Suppressed sequence

    Description
    NG_001350.2: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
Nucleotide Protein Strain
Heading Accession and Version

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