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C1orf202 chromosome 1 open reading frame 202 [ Homo sapiens (human) ]

Gene ID: 122455338, updated on 22-Mar-2024

Summary

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Official Symbol
C1orf202provided by HGNC
Official Full Name
chromosome 1 open reading frame 202provided by HGNC
Primary source
HGNC:HGNC:56760
See related
Ensembl:ENSG00000284188
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
all
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Genomic context

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Location:
1q44
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (244729701..244731015, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (244146000..244147314, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (244893003..244894317, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene catsper channel auxiliary subunit epsilon Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2840 Neighboring gene MPRA-validated peak807 silencer Neighboring gene CYCS pseudogene 5 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:244806024-244806577 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:244815099-244815672 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2841 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2016 Neighboring gene desumoylating isopeptidase 2 Neighboring gene MPRA-validated peak808 silencer Neighboring gene ribosomal protein L37 pseudogene 8 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:244892764-244893500 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:244893501-244894238 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:244898381-244899580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:244923887-244924533 Neighboring gene uncharacterized LOC107985372 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:244972422-244972922 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2844 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:244978837-244979663 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:244979664-244980490 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:244996871-244997630 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2845 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2017 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2846 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2018 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2019 Neighboring gene cytochrome c oxidase assembly factor COX20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein C1orf202

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395959.1 → NP_001382888.1  uncharacterized protein C1orf202

    Status: VALIDATED

    Source sequence(s)
    AL451007
    Consensus CDS
    CCDS91189.1
    UniProtKB/Swiss-Prot
    A0A1W2PPE3
    Related
    ENSP00000491285.1, ENST00000640271.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    244729701..244731015 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    244146000..244147314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A1W2PPE3.1 GenPept UniProtKB/Swiss-Prot:A0A1W2PPE3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.