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COL6A2-DT COL6A2 divergent transcript [ Homo sapiens (human) ]

Gene ID: 122152369, updated on 10-Oct-2023

Summary

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Official Symbol
COL6A2-DTprovided by HGNC
Official Full Name
COL6A2 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55814
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
21q22.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (46091896..46097645, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (44469977..44475726, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene proline-rich protein 36-like Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47458799-47459441 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47469227-47469937 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47469938-47470648 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47475451-47476180 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18597 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47485731-47486346 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47486347-47486960 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47500021-47500530 Neighboring gene proteasome subunit alpha 6 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47504842-47505342 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47505343-47505843 Neighboring gene Sharpr-MPRA regulatory region 12001 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:47527125-47527884 Neighboring gene collagen type VI alpha 2 chain Neighboring gene uncharacterized LOC124905043 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47551971-47552475 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47556247-47557020 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:47560109-47560298 Neighboring gene Sharpr-MPRA regulatory region 3768 Neighboring gene formimidoyltransferase cyclodeaminase Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47571745-47572448 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47572449-47573154 Neighboring gene FTCD antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186433.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001470, AP001471

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    46091896..46097645 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    44469977..44475726 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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