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BTBD3-AS1 BTBD3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 121832811, updated on 26-Oct-2023

Summary

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Official Symbol
BTBD3-AS1provided by HGNC
Official Full Name
BTBD3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40728
See related
Ensembl:ENSG00000236526
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
20p12.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (11909404..11918601, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (11952697..11961894, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 687 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:11812218-11813417 Neighboring gene RN7SK pseudogene 111 Neighboring gene ANAPC13 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:11905320-11905820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:11905821-11906321 Neighboring gene BTB domain containing 3 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:12033906-12035105 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:12046496-12047045 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr20:12054402-12055601 Neighboring gene uncharacterized LOC124904869 Neighboring gene uncharacterized LOC107985406

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186407.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL035448
    Related
    ENST00000439529.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    11909404..11918601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    11952697..11961894 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases