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IKBIP IKBKB interacting protein [ Homo sapiens (human) ]

Gene ID: 121457, updated on 5-Mar-2024

Summary

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Official Symbol
IKBIPprovided by HGNC
Official Full Name
IKBKB interacting proteinprovided by HGNC
Primary source
HGNC:HGNC:26430
See related
Ensembl:ENSG00000166130 MIM:609861; AllianceGenome:HGNC:26430
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
IKIP
Summary
Predicted to be involved in response to X-ray. Located in endoplasmic reticulum. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in placenta (RPKM 6.8), urinary bladder (RPKM 5.4) and 24 other tissues See more
Orthologs
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Genomic context

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See IKBIP in Genome Data Viewer
Location:
12q23.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (98613404..98644788, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (98586371..98617716, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (99007182..99038566, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6845 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:98987254-98987878 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:98987879-98988503 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6847 Neighboring gene MPRA-validated peak1907 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6848 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4754 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_31387 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:99037284-99037911 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4756 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:99038539-99039166 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:99037912-99038538 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:99043141-99044340 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:99072005-99072576 Neighboring gene solute carrier family 25 member 3 Neighboring gene small nucleolar RNA, H/ACA box 53 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_31421 Neighboring gene peptidylprolyl isomerase A pseudogene 8 Neighboring gene MPRA-validated peak1909 silencer Neighboring gene apoptotic peptidase activating factor 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:99187754-99187963 Neighboring gene probable ribosome biogenesis protein RLP24 Neighboring gene ankyrin repeat and sterile alpha motif domain containing 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. IKBIP is a Predictive Biomarker Related to Immunosuppressive Microenvironment in Digestive System Malignancies. Li Q, et al. Discov Med, 2023 Feb 1. PMID 37024442
  2. IKBIP, a novel glioblastoma biomarker, maintains abnormal proliferation of tumor cells by inhibiting the ubiquitination and degradation of CDK4. Li K, et al. Biochim Biophys Acta Mol Basis Dis, 2023 Jan 1. PMID 36244542
  3. hsa_circ_0072389, hsa_circ_0072386, hsa_circ_0008621, hsa_circ_0072387, and hsa_circ_0072391 aggravate glioma via miR-338-5p/IKBIP. Liang J, et al. Aging (Albany NY), 2021 Dec 12. PMID 34897031, Free PMC Article
  4. IKIP Negatively Regulates NF-κB Activation and Inflammation through Inhibition of IKKα/β Phosphorylation. Wu H, et al. J Immunol, 2020 Jan 15. PMID 31826938
  5. A highly conserved proapoptotic gene, IKIP, located next to the APAF1 gene locus, is regulated by p53. Hofer-Warbinek R, et al. Cell Death Differ, 2004 Dec. PMID 15389287

See all (64) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. IKBIP is a Predictive Biomarker Related to Immunosuppressive Microenvironment in Digestive System Malignancies.
    Title: IKBIP is a Predictive Biomarker Related to Immunosuppressive Microenvironment in Digestive System Malignancies.
  2. IKBIP, a novel glioblastoma biomarker, maintains abnormal proliferation of tumor cells by inhibiting the ubiquitination and degradation of CDK4.
    Title: IKBIP, a novel glioblastoma biomarker, maintains abnormal proliferation of tumor cells by inhibiting the ubiquitination and degradation of CDK4.
  3. hsa_circ_0072389, hsa_circ_0072386, hsa_circ_0008621, hsa_circ_0072387, and hsa_circ_0072391 aggravate glioma via miR-338-5p/IKBIP.
    Title: hsa_circ_0072389, hsa_circ_0072386, hsa_circ_0008621, hsa_circ_0072387, and hsa_circ_0072391 aggravate glioma via miR-338-5p/IKBIP.
  4. study identifies a previously unrecognized role for IKIP in the negative regulation of NF-kappaB activation by inhibition of IKKalpha/beta phosphorylation through the disruption of IKK complex formation
    Title: IKIP Negatively Regulates NF-κB Activation and Inflammation through Inhibition of IKKα/β Phosphorylation.
  5. We conclude that IKIP is a novel p53 target gene with proapoptotic function.(IKIP1 protein, human)
    Title: A highly conserved proapoptotic gene, IKIP, located next to the APAF1 gene locus, is regulated by p53.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

HIV-1 interactions

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Protein interactions

Protein Gene Interaction Pubs
Envelope surface glycoprotein gp160, precursor env HIV-1 gp160 interacts with IKBIP; predicted interaction to be within the endoplasmic reticulum and involved in NFKB circuitry PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ31051

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to X-ray TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endoplasmic reticulum membrane TAS
Traceable Author Statement
more info
  
located_in membrane HDA PubMed 
located_in nucleolus IDA
Inferred from Direct Assay
more info
  

General protein information

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Preferred Names
inhibitor of nuclear factor kappa-B kinase-interacting protein
Names
I kappa B kinase interacting protein
IKK interacting protein
i kappa-B kinase-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153687.4 → NP_710154.1  inhibitor of nuclear factor kappa-B kinase-interacting protein isoform 1

    See identical proteins and their annotated locations for NP_710154.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AC013283, AJ539425, BC058933, BM468651
    Consensus CDS
    CCDS9068.1
    UniProtKB/Swiss-Prot
    Q70UQ0
    Related
    ENSP00000299157.4, ENST00000299157.5
    Conserved Domains (1) summary
    cl25732
    Location:83 → 348
    SMC_N; RecF/RecN/SMC N terminal domain

  2. NM_201612.4 → NP_963906.1  inhibitor of nuclear factor kappa-B kinase-interacting protein isoform 2

    See identical proteins and their annotated locations for NP_963906.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate exon at its 3'-terminal exon, compared to variant 1, which results in a protein (isoform 2) with a shorter and distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AC013283, AJ539426
    Consensus CDS
    CCDS9067.1
    UniProtKB/Swiss-Prot
    Q6ZWH4, Q70UP9, Q70UQ0, Q86V91, Q96ND2
    Related
    ENSP00000343471.2, ENST00000342502.6
    Conserved Domains (1) summary
    cl23887
    Location:59 → 222
    DUF4349; Domain of unknown function (DUF4349)

  3. NM_201613.4 → NP_963907.1  inhibitor of nuclear factor kappa-B kinase-interacting protein isoform 3

    See identical proteins and their annotated locations for NP_963907.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate exon at its 3'-terminal exon and lacks an internal exon, compared to variant 1, which results in a protein (isoform 3; also known as 3.1) with a shorter and distinct C-terminus, compared to isoform 1. The 3'-terminal exon of variant 3 contains a longer ORF which can potentially encode a protein (called isoform 3.2) that matches the C-terminus of isoform 2; however, this protein is not predicted to be translated because the ORF is overlapped by the upstream ORF encoding isoform 3.
    Source sequence(s)
    AC013283, AJ539427
    Consensus CDS
    CCDS41822.1
    UniProtKB/Swiss-Prot
    Q70UQ0
    Related
    ENSP00000376762.3, ENST00000393042.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    98613404..98644788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    98586371..98617716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q70UQ0.1 GenPept UniProtKB/Swiss-Prot:Q70UQ0

Gene LinkOut

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