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GGTA2P glycoprotein alpha-galactosyltransferase 2, pseudogene [ Homo sapiens (human) ]

Gene ID: 121328, updated on 10-Oct-2023

Summary

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Official Symbol
GGTA2Pprovided by HGNC
Official Full Name
glycoprotein alpha-galactosyltransferase 2, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:4254
See related
Ensembl:ENSG00000237766 AllianceGenome:HGNC:4254
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HGT2; GLYT3; GGTA1P; GLYT2L
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Genomic context

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See GGTA2P in Genome Data Viewer
Location:
12q14.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (67265839..67266962, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (67245226..67246349, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (67659619..67660742, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724421 Neighboring gene RAB11A, member RAS oncogene family pseudogene 2 Neighboring gene NANOG hESC enhancer GRCh37_chr12:67581835-67582336 Neighboring gene NANOG hESC enhancer GRCh37_chr12:67630932-67631461 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6623 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6624 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:67663253-67663904 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:67671759-67672260 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:67672261-67672760 Neighboring gene cullin associated and neddylation dissociated 1 Neighboring gene uncharacterized LOC124902957 Neighboring gene NANOG hESC enhancer GRCh37_chr12:67734433-67734949 Neighboring gene mitochondrial ribosomal protein L40 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of an alpha 1----3-galactosyltransferase homologue on human chromosome 12 that is organized as a processed pseudogene. Joziasse DH, et al. J Biol Chem, 1991 Apr 15. PMID 1901859
  2. Frameshift and nonsense mutations in a human genomic sequence homologous to a murine UDP-Gal:beta-D-Gal(1,4)-D-GlcNAc alpha(1,3)-galactosyltransferase cDNA. Larsen RD, et al. J Biol Chem, 1990 Apr 25. PMID 2108966
  3. Assignment of two human alpha-1,3-galactosyltransferase gene sequences (GGTA1 and GGTA1P) to chromosomes 9q33-q34 and 12q14-q15. Shaper NL, et al. Genomics, 1992 Mar. PMID 1559713
  4. Estimate of the mutation rate per nucleotide in humans. Nachman MW, et al. Genetics, 2000 Sep. PMID 10978293, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • alpha-1,3-galactosyltransferase pseudogene
  • glycoprotein, alpha-galactosyltransferase 1 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_002767.2 

    Range
    101..1224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    67265839..67266962 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    67245226..67246349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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