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ITGA2-AS1 ITGA2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 121232372, updated on 26-Oct-2023

Summary

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Official Symbol
ITGA2-AS1provided by HGNC
Official Full Name
ITGA2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40306
See related
Ensembl:ENSG00000249899
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
I2ALR
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Genomic context

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See ITGA2-AS1 in Genome Data Viewer
Location:
5q11.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (52930606..52990286, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (53758365..53818051, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene integrin subunit alpha 1 Neighboring gene B3GNTL1 pseudogene 1 Neighboring gene ribosomal protein L17 pseudogene 21 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:52283322-52284521 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16003 Neighboring gene integrin subunit alpha 2 Neighboring gene uncharacterized LOC124900974 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16004 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16005 Neighboring gene molybdenum cofactor synthesis 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel long non-coding RNA regulates the integrin, ITGA2 in breast cancer. Verhoeff TJ, et al. Breast Cancer Res Treat, 2022 Feb. PMID 35098437

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A novel long non-coding RNA regulates the integrin, ITGA2 in breast cancer.
    Title: A novel long non-coding RNA regulates the integrin, ITGA2 in breast cancer.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

General gene information

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Other Names

  • ITGA2 Antisense LncRNA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186583.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008966, AC025180
    Related
    ENST00000662246.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    52930606..52990286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    53758365..53818051 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases