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SNRPA1-DT SNRPA1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 120766138, updated on 26-Oct-2023

Summary

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Official Symbol
SNRPA1-DTprovided by HGNC
Official Full Name
SNRPA1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55431
See related
Ensembl:ENSG00000259172
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
15q26.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (101295348..101305737)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (99050399..99060802)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6888 Neighboring gene selenoprotein S Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10192 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:101834407-101835038 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6889 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10193 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10194 Neighboring gene small nuclear ribonucleoprotein polypeptide A' Neighboring gene uncharacterized LOC100507472 Neighboring gene proprotein convertase subtilisin/kexin type 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:101866838-101867338 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6890 Neighboring gene PCSK6 antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186319.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC023024
    Related
    ENST00000558838.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    101295348..101305737
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    99050399..99060802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases