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PPM1L-DT PPM1L divergent transcript [ Homo sapiens (human) ]

Gene ID: 119863869, updated on 10-Oct-2023

Summary

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Official Symbol
PPM1L-DTprovided by HGNC
Official Full Name
PPM1L divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55390
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
3q25.33
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (160750785..160755451, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (163525406..163530072, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:160394435-160395634 Neighboring gene small nucleolar RNA SNORA72 Neighboring gene ADP ribosylation factor like GTPase 14 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20762 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20763 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14858 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14859 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14860 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14861 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1L Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20765 Neighboring gene Sharpr-MPRA regulatory region 1323 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14862 Neighboring gene MPRA-validated peak4889 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:160701588-160702158 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20766 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20767 Neighboring gene uncharacterized LOC124909453 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14863 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14864 Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 1 (Globoside blood group)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_185913.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC069224

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    160750785..160755451 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    163525406..163530072 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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