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CLK2P1 CDC like kinase 2, pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 1197, updated on 10-Oct-2023

Summary

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Official Symbol
CLK2P1provided by HGNC
Official Full Name
CDC like kinase 2, pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:2070
See related
AllianceGenome:HGNC:2070
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CLK2P
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Genomic context

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See CLK2P1 in Genome Data Viewer
Location:
7p15.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (23584716..23586527, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (23724067..23725878, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (23624335..23626146, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene transformer 2 alpha homolog Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:23570658-23571228 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:23571229-23571798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:23571837-23572338 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:23572339-23572838 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25736 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25737 Neighboring gene ATP binding cassette subfamily E member 1 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr7:23620581-23620772 Neighboring gene uncharacterized LOC105375187 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25738 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18014 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:23645851-23645985 Neighboring gene coiled-coil domain containing 126 Neighboring gene FCF1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chromosomal mapping of three human LAMMER protein-kinase-encoding genes. Talmadge CB, et al. Hum Genet, 1998 Oct. PMID 9856501
  2. Characterization by cDNA cloning of two new human protein kinases. Evidence by sequence comparison of a new family of mammalian protein kinases. Hanes J, et al. J Mol Biol, 1994 Dec 16. PMID 7990150
  3. Human chromosome 7: DNA sequence and biology. Scherer SW, et al. Science, 2003 May 2. PMID 12690205, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • CDC-like kinase 2, pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002711.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006026, BC022025

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    23584716..23586527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    23724067..23725878 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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