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NUDT9P1 nudix hydrolase 9 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 119369, updated on 10-Oct-2023

Summary

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Official Symbol
NUDT9P1provided by HGNC
Official Full Name
nudix hydrolase 9 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:28523
See related
AllianceGenome:HGNC:28523
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C10orf98; bA56M3.1
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Genomic context

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Location:
10q23.32
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (91152535..91153197, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (92036225..92036887, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (92912292..92912954, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3760 Neighboring gene uncharacterized LOC105378429 Neighboring gene uncharacterized LOC124902481 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2602 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2603 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2604 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:92923911-92924447 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:92932029-92932262 Neighboring gene uncharacterized LOC124902480 Neighboring gene polycomb group ring finger 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3762 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2605 Neighboring gene Sharpr-MPRA regulatory region 216 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:93007586-93007768 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:93044145-93044720 Neighboring gene HECTD2 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3763 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2607 Neighboring gene MPRA-validated peak1048 silencer Neighboring gene HECT domain E3 ubiquitin protein ligase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Applicability of a genetic signature for enhanced iloperidone efficacy in the treatment of schizophrenia. Volpi S, et al. J Clin Psychiatry, 2009 Jun. PMID 19573479
  2. Association of the NPAS3 gene and five other loci with response to the antipsychotic iloperidone identified in a whole genome association study. Lavedan C, et al. Mol Psychiatry, 2009 Aug. PMID 18521090
  3. Towards a proteome-scale map of the human protein-protein interaction network. Rual JF, et al. Nature, 2005 Oct 20. PMID 16189514
  4. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Clinical trial of gene-disease association, gene-gene interaction, gene-environment interaction, and pharmacogenomic / toxicogenomic. (HuGE Navigator)
    Title: Applicability of a genetic signature for enhanced iloperidone efficacy in the treatment of schizophrenia.
  2. Genome-wide association study of gene-disease association. (HuGE Navigator)
    Title: Association of the NPAS3 gene and five other loci with response to the antipsychotic iloperidone identified in a whole genome association study.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Other Names

  • nudix (nucleoside diphosphate linked moiety X)-type motif 9 pseudogene 1

Clone Names

  • MGC34007

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002779.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL731553

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    91152535..91153197 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    92036225..92036887 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_153205.1: Suppressed sequence

    Description
    NM_153205.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version

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