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STAG1-DT STAG1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 119139906, updated on 26-Oct-2023

Summary

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Official Symbol
STAG1-DTprovided by HGNC
Official Full Name
STAG1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55350
See related
Ensembl:ENSG00000261758
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
3q22.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (136752671..136755840)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (139493385..139496554)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene STAG1 cohesin complex component Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:136442929-136443555 Neighboring gene RNA, U6 small nuclear 789, pseudogene Neighboring gene hESC enhancers GRCh37_chr3:136470665-136471596 and GRCh37_chr3:136471597-136472528 Neighboring gene DNAJC8 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20588 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14760 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14761 Neighboring gene sulfotransferase family 1D member 1 pseudogene 2 Neighboring gene solute carrier family 35 member G2 Neighboring gene NCK1 divergent transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_185911.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC117382
    Related
    ENST00000564748.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    136752671..136755840
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    139493385..139496554
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases