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Msantd7 Myb/SANT DNA binding domain containing 7 [ Mus musculus (house mouse) ]

Gene ID: 119065974, updated on 21-Mar-2024

Summary

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Official Symbol
Msantd7provided by MGI
Official Full Name
Myb/SANT DNA binding domain containing 7provided by MGI
Primary source
MGI:MGI:5805017
See related
Ensembl:ENSMUSG00000051396 AllianceGenome:MGI:5805017
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm45902
Orthologs
human all
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Genomic context

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Location:
2 A1; 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (3505564..3513851, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene DNA cross-link repair 1C Neighboring gene suppressor of variegation 3-9 2 Neighboring gene STARR-seq mESC enhancer starr_03515 Neighboring gene predicted gene, 54099 Neighboring gene heat shock protein 14 Neighboring gene STARR-positive B cell enhancer ABC_E272 Neighboring gene cerebral dopamine neurotrophic factor Neighboring gene NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000068.8 Chromosome 2 Reference GRCm39 C57BL/6J

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
zinc finger and SCAN domain containing 29

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001388450.1 → NP_001375379.1  zinc finger and SCAN domain containing 29

    Status: VALIDATED

    Source sequence(s)
    AL732620
    UniProtKB/TrEMBL
    D6RJ26, F6QKP8, Q3UDN3, Q8CD30
    Related
    ENSMUSP00000119850.3, ENSMUST00000124331.8
    Conserved Domains (1) summary
    pfam13837
    Location:11 → 94
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  2. NM_001388451.1 → NP_001375380.1  zinc finger and SCAN domain containing 29

    Status: VALIDATED

    Source sequence(s)
    AL732620
    UniProtKB/TrEMBL
    D6RJ26, F6QKP8, Q3UDN3, Q8CD30
    Related
    ENSMUSP00000120385.3, ENSMUST00000140494.2
    Conserved Domains (1) summary
    pfam13837
    Location:11 → 94
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    3505564..3513851 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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