U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CTSLP1 cathepsin L pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 118945, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
CTSLP1provided by HGNC
Official Full Name
cathepsin L pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:2539
See related
AllianceGenome:HGNC:2539
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CTSLL; CTSLL1; CTSL1P1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
10q23.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (87386361..87390215, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (88269960..88273814, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (89146118..89149972, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:89119641-89120142 Neighboring gene NUT family member 2D Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:89142841-89143342 Neighboring gene nuclear pore associated protein 1 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:89150255-89151229 Neighboring gene family with sequence similarity 245 member A Neighboring gene MPRA-validated peak1047 silencer Neighboring gene uncharacterized LOC112268063 Neighboring gene Sharpr-MPRA regulatory region 7232

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A novel family of cathepsin L-like (CTSLL) sequences on human chromosome 10q and related transcripts. Bryce SD, et al. Genomics, 1994 Dec. PMID 7713509

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

Go to the top of the page Help

Other Names

  • cathepsin L-like 1 (pseudogene)
  • cathepsin L1 pseudogene 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_009858.2 

    Range
    101..3955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    87386361..87390215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    88269960..88273814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials