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PATJ-DT PATJ divergent transcript [ Homo sapiens (human) ]

Gene ID: 118732297, updated on 10-Oct-2023

Summary

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Official Symbol
PATJ-DTprovided by HGNC
Official Full Name
PATJ divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55256
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
1p31.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (61741998..61742784, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (61620860..61621646, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene Neighboring gene MPRA-validated peak264 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:62190259-62191458 Neighboring gene TM2 domain containing 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 944 Neighboring gene PATJ crumbs cell polarity complex component Neighboring gene RNA, U6 small nuclear 414, pseudogene Neighboring gene microRNA 12132

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_185910.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC097064, AC099791

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    61741998..61742784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    61620860..61621646 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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