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THBS1-IT1 THBS1 intronic transcript 1 [ Homo sapiens (human) ]

Gene ID: 118597829, updated on 10-Oct-2023

Summary

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Official Symbol
THBS1-IT1provided by HGNC
Official Full Name
THBS1 intronic transcript 1provided by HGNC
Primary source
HGNC:HGNC:55225
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
15q14
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (39586126..39587253)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (37390933..37392060)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370784 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:39822787-39823391 Neighboring gene uncharacterized LOC124903470 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:39872371-39873108 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:39885600-39886799 Neighboring gene thrombospondin 1 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:39909535-39910734 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9216 Neighboring gene fibrous sheath interacting protein 1 Neighboring gene uncharacterized LOC105370785 Neighboring gene NANOG hESC enhancer GRCh37_chr15:39958804-39959320 Neighboring gene Sharpr-MPRA regulatory region 4200 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6312 Neighboring gene uncharacterized LOC105370941 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9217

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186398.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC037198

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    39586126..39587253
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    37390933..37392060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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