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1110038F14Rik RIKEN cDNA 1110038F14 gene [ Mus musculus (house mouse) ]

Gene ID: 117171, updated on 5-Mar-2024

Summary

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Official Symbol
1110038F14Rikprovided by MGI
Official Full Name
RIKEN cDNA 1110038F14 geneprovided by MGI
Primary source
MGI:MGI:2152337
See related
Ensembl:ENSMUSG00000063236 AllianceGenome:MGI:2152337
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C8orf33 (chromosome 8 open reading frame 33). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 16.4), limb E14.5 (RPKM 13.1) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
15 D3; 15 36.3 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (76832453..76835179)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (76948251..76950979)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 647 Neighboring gene zinc finger protein 113 pseudogene Neighboring gene predicted gene, 46534 Neighboring gene STARR-seq mESC enhancer starr_39068 Neighboring gene STARR-seq mESC enhancer starr_39069 Neighboring gene predicted gene, 35933 Neighboring gene predicted gene, 53916

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
UPF0488 protein C8orf33 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347540.1 → NP_001334469.1  UPF0488 protein C8orf33 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC157554, AK141496, AK153059
    Consensus CDS
    CCDS84175.1
    UniProtKB/Swiss-Prot
    Q3U6N9, Q3URI5, Q9D0Z5
    Related
    ENSMUSP00000071698.6, ENSMUST00000071792.7

  2. NM_054099.3 → NP_473440.1  UPF0488 protein C8orf33 homolog isoform 2

    See identical proteins and their annotated locations for NP_473440.1

    Status: VALIDATED

    Source sequence(s)
    AK141496, BC038324, BY090286
    Consensus CDS
    CCDS88794.1
    UniProtKB/Swiss-Prot
    Q3U6N9
    Related
    ENSMUSP00000154907.2, ENSMUST00000230274.2
    Conserved Domains (1) summary
    pfam15393
    Location:40 → 159
    DUF4615; Domain of unknown function (DUF4615)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    76832453..76835179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_003951346.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3U6N9.1 GenPept UniProtKB/Swiss-Prot:Q3U6N9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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