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IRF2-DT IRF2 divergent transcript [ Homo sapiens (human) ]

Gene ID: 117134601, updated on 26-Oct-2023

Summary

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Official Symbol
IRF2-DTprovided by HGNC
Official Full Name
IRF2 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:54871
See related
Ensembl:ENSG00000271646
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
4q35.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (184474802..184477304)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (187818624..187821125)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2362 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22214 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:185304232-185305431 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:185307527-185308285 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:185310291-185311024 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:185311025-185311758 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:185314606-185314781 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22215 Neighboring gene interferon regulatory factor 2 Neighboring gene Sharpr-MPRA regulatory region 12125 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22216 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:185339175-185340374 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:185351299-185351950 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:185351951-185352602 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22218 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22219 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22220 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15836 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15837 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15838 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15839 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22221 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22222 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:185424979-185426178 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22225 Neighboring gene long intergenic non-protein coding RNA 2427 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22226 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22227 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22228 Neighboring gene NANOG hESC enhancer GRCh37_chr4:185450344-185450869 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22229 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22230 Neighboring gene GAR1 ribonucleoprotein homolog (yeast) pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. LncRNAs Predicted to Interfere With the Gene Regulation Activity of miR-637 and miR-196a-5p in GBM. Zheng J, et al. Front Oncol, 2020. PMID 32211330, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186573.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC099343
    Related
    ENST00000605834.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    184474802..184477304
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    187818624..187821125
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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