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WASL-DT WASL divergent transcript [ Homo sapiens (human) ]

Gene ID: 116435299, updated on 10-Oct-2023

Summary

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Official Symbol
WASL-DTprovided by HGNC
Official Full Name
WASL divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:54820
See related
Ensembl:ENSG00000272686 AllianceGenome:HGNC:54820
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
7q31.32
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (123749195..123750981)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (125065934..125067720)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (123389249..123391035)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene leiomodin 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:123332146-123332646 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:123332647-123333147 Neighboring gene WASP like actin nucleation promoting factor Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26570 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18587 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:123388787-123389441 Neighboring gene hyaluronidase 4 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:123438019-123438540 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:123438541-123439062 Neighboring gene RNA, U6 small nuclear 11, pseudogene Neighboring gene hyaluronidase 6, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Recounting the FANTOM CAGE-Associated Transcriptome. Imada EL, et al. Genome Res, 2020 Jul. PMID 32079618, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_170281.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC006333
    Related
    ENST00000607957.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    123749195..123750981
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    125065934..125067720
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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