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FMO9P flavin containing dimethylaniline monoxygenase 9, pseudogene [ Homo sapiens (human) ]

Gene ID: 116123, updated on 10-Oct-2023

Summary

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Official Symbol
FMO9Pprovided by HGNC
Official Full Name
flavin containing dimethylaniline monoxygenase 9, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:32210
See related
Ensembl:ENSG00000290604 AllianceGenome:HGNC:32210
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in urinary bladder (RPKM 4.8) and esophagus (RPKM 0.3) See more
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Genomic context

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Location:
1q24.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (166603916..166625238)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (165949825..165971136)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (166573153..166594475)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1675 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2026 Neighboring gene flavin containing dimethylaniline monoxygenase 7, pseudogene Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:166546309-166547508 Neighboring gene flavin containing dimethylaniline monoxygenase 8, pseudogene Neighboring gene flavin containing dimethylaniline monoxygenase 10, pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:166644091-166645290 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:166687833-166687935 Neighboring gene ribosomal protein L4 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Organization and evolution of the flavin-containing monooxygenase genes of human and mouse: identification of novel gene and pseudogene clusters. Hernandez D, et al. Pharmacogenetics, 2004 Feb. PMID 15077013
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • RP11-45J16.2
  • flavin containing monooxygenase 9, pseudogene

Clone Names

  • MGC23941

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002925.2 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    BC014341
    Related
    ENST00000477875.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    166603916..166625238
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    165949825..165971136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_138784.1: Suppressed sequence

    Description
    NM_138784.1: This RefSeq was permanently suppressed because this locus represents a pseudogene rather than a protein coding gene.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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