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ZNNT1 ZNF706 neighboring transcript 1 [ Homo sapiens (human) ]

Gene ID: 115830329, updated on 23-Mar-2024

Summary

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Official Symbol
ZNNT1provided by HGNC
Official Full Name
ZNF706 neighboring transcript 1provided by HGNC
Primary source
HGNC:HGNC:54438
See related
Ensembl:ENSG00000261087 AllianceGenome:HGNC:54438
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
8q22.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (101166805..101170239, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (102292523..102295957, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (102179033..102182467, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 3090 Neighboring gene uncharacterized LOC105375676 Neighboring gene RN7SK pseudogene 249 Neighboring gene NFE2L2 motif-containing MPRA enhancer 220/221 Neighboring gene Sharpr-MPRA regulatory region 12327 Neighboring gene Sharpr-MPRA regulatory region 12099 Neighboring gene Sharpr-MPRA regulatory region 1163 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27728 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19431 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19432 Neighboring gene zinc finger protein 706 Neighboring gene uncharacterized LOC107984005 Neighboring gene Sharpr-MPRA regulatory region 4487 Neighboring gene myeloid leukemia factor 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. METTL3/16-mediated m[6]A modification of ZNNT1 promotes hepatocellular carcinoma progression by activating ZNNT1/osteopontin/S100A9 positive feedback loop-mediated crosstalk between macrophages and tumour cells.
    Title: METTL3/16-mediated m(6)A modification of ZNNT1 promotes hepatocellular carcinoma progression by activating ZNNT1/osteopontin/S100A9 positive feedback loop-mediated crosstalk between macrophages and tumour cells.
  2. ZNNT1 long noncoding RNA induces autophagy to inhibit tumorigenesis of uveal melanoma by regulating key autophagy gene expression.
    Title: ZNNT1 long noncoding RNA induces autophagy to inhibit tumorigenesis of uveal melanoma by regulating key autophagy gene expression.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Clone Names

  • AP003469.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_164368.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP003469
    Related
    ENST00000565617.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    101166805..101170239 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    102292523..102295957 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials