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Snord60 small nucleolar RNA, C/D box 60 [ Mus musculus (house mouse) ]

Gene ID: 115488833, updated on 8-Feb-2024

Summary

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Official Symbol
Snord60provided by MGI
Official Full Name
small nucleolar RNA, C/D box 60provided by MGI
Primary source
MGI:MGI:5453296
See related
Ensembl:ENSMUSG00000064768 AllianceGenome:MGI:5453296
Gene type
snoRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm23519
Summary
Acts upstream of or within intracellular cholesterol transport. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
17 A3.3; 17
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (24747450..24747527)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (24528476..24528553)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5578 Neighboring gene BRICHOS domain containing 5 Neighboring gene STARR-seq mESC enhancer starr_42087 Neighboring gene MTOR associated protein, LST8 homolog (S. cerevisiae) Neighboring gene CASK interacting protein 1 Neighboring gene TNF receptor-associated factor 7 Neighboring gene STARR-positive B cell enhancer ABC_E33 Neighboring gene RAB26, member RAS oncogene family, opposite strand Neighboring gene RAB26, member RAS oncogene family Neighboring gene predicted gene, 33508

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Box C/D small nucleolar RNA (snoRNA) U60 regulates intracellular cholesterol trafficking. Brandis KA, et al. J Biol Chem, 2013 Dec 13. PMID 24174535, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • small nucleolar RNA SNORD60

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular cholesterol transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    24747450..24747527
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004939753.1 RNA Sequence

    Related
    ENSMUST00000082834.3
Nucleotide Protein Strain
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Gene LinkOut

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