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Snord138 small nucleolar RNA, C/D box 138 [ Mus musculus (house mouse) ]

Gene ID: 115488275, updated on 8-Feb-2024

Summary

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Official Symbol
Snord138provided by MGI
Official Full Name
small nucleolar RNA, C/D box 138provided by MGI
Primary source
MGI:MGI:5452351
See related
Ensembl:ENSMUSG00000064917 AllianceGenome:MGI:5452351
Gene type
snoRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm22574
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Genomic context

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Location:
13 C3; 13
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (86193108..86193167, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (86044989..86045048, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_35186 Neighboring gene STARR-seq mESC enhancer starr_35187 Neighboring gene STARR-seq mESC enhancer starr_35188 Neighboring gene predicted gene, 46396 Neighboring gene STARR-positive B cell enhancer ABC_E9886 Neighboring gene STARR-seq mESC enhancer starr_35189 Neighboring gene STARR-seq mESC enhancer starr_35190 Neighboring gene predicted gene, 34526 Neighboring gene cytochrome c oxidase subunit 7C Neighboring gene STARR-seq mESC enhancer starr_35192 Neighboring gene STARR-seq mESC enhancer starr_35193 Neighboring gene STARR-seq mESC enhancer starr_35196 Neighboring gene STARR-seq mESC enhancer starr_35197 Neighboring gene STARR-seq mESC enhancer starr_35198 Neighboring gene predicted gene, 51420 Neighboring gene STARR-seq mESC enhancer starr_35200 Neighboring gene STARR-seq mESC enhancer starr_35202 Neighboring gene PDZ domain containing 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Secondary loss of miR-3607 reduced cortical progenitor amplification during rodent evolution. Chinnappa K, et al. Sci Adv, 2022 Jan 14. PMID 35020425, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • small nucleolar RNA Z39

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    86193108..86193167 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004938345.1 RNA Sequence

    Related
    ENSMUST00000082983.2
Nucleotide Protein Strain
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