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H2BL1P H2B.L histone variant 1, pseudogene [ Homo sapiens (human) ]

Gene ID: 115482689, updated on 10-Oct-2023

Summary

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Official Symbol
H2BL1Pprovided by HGNC
Official Full Name
H2B.L histone variant 1, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:54442
See related
Ensembl:ENSG00000223497 AllianceGenome:HGNC:54442
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
H2BP4; SubH2Bv
Summary
Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
5q13.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (72733833..72734209)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (73214984..73215360)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (72029660..72030036)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102503427 Neighboring gene TNPO1 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22652 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:71930309-71930809 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:72004631-72005132 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:72005133-72005632 Neighboring gene ribosomal protein L7 pseudogene 22 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22653 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16083 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16084 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22654 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22655 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16085 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22656 Neighboring gene transportin 1 Neighboring gene ribosomal protein L35a pseudogene 13 Neighboring gene microRNA 4804

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Acrosomal biogenesis in human globozoospermia: immunocytochemical, ultrastructural and proteomic studies. Alvarez Sedó C, et al. Hum Reprod, 2012 Jul. PMID 22511613
  2. Biogenesis of the sperm head perinuclear theca during human spermiogenesis. Alvarez Sedó C, et al. Fertil Steril, 2009 Oct. PMID 19159874
  3. The major subacrosomal occupant of bull spermatozoa is a novel histone H2B variant associated with the forming acrosome during spermiogenesis. Aul RB, et al. Dev Biol, 2002 Feb 15. PMID 11892742

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • 1700024P04Rik
  • H2B histone pseudogene 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_066041.1 

    Range
    101..477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    72733833..72734209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    73214984..73215360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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