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TMEM200A transmembrane protein 200A [ Homo sapiens (human) ]

Gene ID: 114801, updated on 7-Apr-2024

Summary

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Official Symbol
TMEM200Aprovided by HGNC
Official Full Name
transmembrane protein 200Aprovided by HGNC
Primary source
HGNC:HGNC:21075
See related
Ensembl:ENSG00000164484 AllianceGenome:HGNC:21075
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TTMA; TTMC; KIAA1913
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in endometrium (RPKM 12.2), adrenal (RPKM 5.0) and 16 other tissues See more
Orthologs
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Genomic context

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Location:
6q23.1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (130365531..130443067)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (131560183..131637851)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (130687162..130764212)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17535 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17536 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17537 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25052 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25053 Neighboring gene L3MBTL histone methyl-lysine binding protein 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25054 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17538 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25055 Neighboring gene NANOG hESC enhancer GRCh37_chr6:130473790-130474410 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:130498512-130498711 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25056 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:130515807-130516307 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:130518767-130519347 Neighboring gene sterile alpha motif domain containing 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25057 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25058 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25059 Neighboring gene uncharacterized LOC112267974 Neighboring gene MPRA-validated peak6122 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17539 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25060 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:130838308-130839507 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25061 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17540 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:130923105-130924304 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:130935046-130936245 Neighboring gene Sharpr-MPRA regulatory region 149 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:130953902-130954652 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:131022881-131023397 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:131032856-131033370 Neighboring gene uncharacterized LOC105378002 Neighboring gene uncharacterized LOC105378003

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. TMEM200A is a potential prognostic biomarker and correlated with immune infiltrates in gastric cancer. Fang F, et al. PeerJ, 2023. PMID 37404478, Free PMC Article
  2. High expression of TMEM200A is associated with a poor prognosis and immune infiltration in gastric cancer. Deng H, et al. Pathol Oncol Res, 2023. PMID 36741965, Free PMC Article
  3. No evidence of gene-calcium interactions from genome-wide analysis of colorectal cancer risk. Du M, et al. Cancer Epidemiol Biomarkers Prev, 2014 Dec. PMID 25192705, Free PMC Article
  4. Candidate psychiatric illness genes identified in patients with pericentric inversions of chromosome 18. Pickard BS, et al. Psychiatr Genet, 2005 Mar. PMID 15722956
  5. ARRDC1 and ARRDC3 act as tumor suppressors in renal cell carcinoma by facilitating YAP1 degradation. Xiao J, et al. Am J Cancer Res, 2018. PMID 29416926, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. TMEM200A is a potential prognostic biomarker and correlated with immune infiltrates in gastric cancer.
    Title: TMEM200A is a potential prognostic biomarker and correlated with immune infiltrates in gastric cancer.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
No evidence of gene-calcium interactions from genome-wide analysis of colorectal cancer risk.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • KIAA1913

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 200A
Names
two transmembrane C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001258276.2 → NP_001245205.1  transmembrane protein 200A

    See identical proteins and their annotated locations for NP_001245205.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shortest transcript. Variants 1-4 encode the same protein.
    Source sequence(s)
    AB052099, AK315824, AL121947, DA657363
    Consensus CDS
    CCDS5140.1
    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1
    Related
    ENSP00000480294.1, ENST00000617887.4
    Conserved Domains (1) summary
    pfam10177
    Location:16 → 161
    DUF2371; Uncharacterized conserved protein (DUF2371)

  2. NM_001258277.2 → NP_001245206.1  transmembrane protein 200A

    See identical proteins and their annotated locations for NP_001245206.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate exon in the 5' UTR, compared to variant 1.
    Source sequence(s)
    AB052099, AB067500, AL121947
    Consensus CDS
    CCDS5140.1
    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1
    Related
    ENSP00000296978.3, ENST00000296978.4
    Conserved Domains (1) summary
    pfam10177
    Location:16 → 161
    DUF2371; Uncharacterized conserved protein (DUF2371)

  3. NM_001258278.2 → NP_001245207.1  transmembrane protein 200A

    See identical proteins and their annotated locations for NP_001245207.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and represents the use of an alternate promoter, compared to variant 1.
    Source sequence(s)
    AB052099, AL137185, DA164344
    Consensus CDS
    CCDS5140.1
    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1
    Related
    ENSP00000438928.1, ENST00000545622.5
    Conserved Domains (1) summary
    pfam10177
    Location:16 → 161
    DUF2371; Uncharacterized conserved protein (DUF2371)

  4. NM_052913.3 → NP_443145.1  transmembrane protein 200A

    See identical proteins and their annotated locations for NP_443145.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR and represents the use of an alternate promoter, compared to variant 1.
    Source sequence(s)
    AB052099, AL137251
    Consensus CDS
    CCDS5140.1
    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1
    Related
    ENSP00000376224.1, ENST00000392429.1
    Conserved Domains (1) summary
    pfam10177
    Location:16 → 161
    DUF2371; Uncharacterized conserved protein (DUF2371)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    130365531..130443067
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005266816.4 → XP_005266873.1  transmembrane protein 200A isoform X1

    See identical proteins and their annotated locations for XP_005266873.1

    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1
    Conserved Domains (1) summary
    pfam10177
    Location:16 → 161
    DUF2371; Uncharacterized conserved protein (DUF2371)

  2. XM_047418151.1 → XP_047274107.1  transmembrane protein 200A isoform X1

    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1

  3. XM_047418155.1 → XP_047274111.1  transmembrane protein 200A isoform X1

    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1

  4. XM_047418152.1 → XP_047274108.1  transmembrane protein 200A isoform X1

    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1

  5. XM_047418154.1 → XP_047274110.1  transmembrane protein 200A isoform X1

    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1

  6. XM_047418153.1 → XP_047274109.1  transmembrane protein 200A isoform X1

    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1

  7. XM_017010230.3 → XP_016865719.1  transmembrane protein 200A isoform X1

    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1
    Conserved Domains (1) summary
    pfam10177
    Location:16 → 161
    DUF2371; Uncharacterized conserved protein (DUF2371)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    131560183..131637851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054354166.1 → XP_054210141.1  transmembrane protein 200A isoform X1

    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1

  2. XM_054354167.1 → XP_054210142.1  transmembrane protein 200A isoform X1

    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1

  3. XM_054354169.1 → XP_054210144.1  transmembrane protein 200A isoform X1

    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1

  4. XM_054354170.1 → XP_054210145.1  transmembrane protein 200A isoform X1

    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1

  5. XM_054354171.1 → XP_054210146.1  transmembrane protein 200A isoform X1

    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1

  6. XM_054354168.1 → XP_054210143.1  transmembrane protein 200A isoform X1

    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1

  7. XM_054354172.1 → XP_054210147.1  transmembrane protein 200A isoform X1

    UniProtKB/Swiss-Prot
    Q86VY9, Q96PX5
    UniProtKB/TrEMBL
    A8K2A1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q86VY9.1 GenPept UniProtKB/Swiss-Prot:Q86VY9

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