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BMS1P4-AGAP5 BMS1P4-AGAP5 readthrough [ Homo sapiens (human) ]

Gene ID: 113939925, updated on 10-Oct-2023

Summary

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Official Symbol
BMS1P4-AGAP5provided by HGNC
Official Full Name
BMS1P4-AGAP5 readthroughprovided by HGNC
Primary source
HGNC:HGNC:55636
See related
Ensembl:ENSG00000242288 AllianceGenome:HGNC:55636
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents naturally occurring readthrough transcription between the neighboring BMS1P4 (BMS1, ribosome biogenesis factor pseudogene 4) and AGAP5 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 5) genes on chromosome 10. The readthrough transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Jan 2019]
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Genomic context

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Location:
10q22.2
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (73674275..73730506, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (74545692..74601920, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (75434033..75490264, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene myozenin 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:75407469-75408172 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3567 Neighboring gene synaptopodin 2 like Neighboring gene SYNPO2L antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 4994 Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 5 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:75468020-75468273 Neighboring gene BMS1 pseudogene 4 Neighboring gene RNA, 5S ribosomal pseudogene 320 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3568 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:75491691-75492411 Neighboring gene glutamate dehydrogenase 1 pseudogene 3 Neighboring gene dual specificity phosphatase 8 pseudogene 5 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:75500671-75501238 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:75501239-75501806 Neighboring gene uncharacterized LOC124902453 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:75503472-75504671

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • BMS1P4-AGAP5 readthough

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_160425.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022400, AC073389, BC020053
    Related
    ENST00000399449.3

  2. NR_160426.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022400, AC073389

  3. NR_160427.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022400, AC073389

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    73674275..73730506 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    74545692..74601920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases