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BMS1P2-AGAP9 BMS1P2-AGAP9 readthrough [ Homo sapiens (human) ]

Gene ID: 113939912, updated on 10-Oct-2023

Summary

Gene symbol
BMS1P2-AGAP9
Gene description
BMS1P2-AGAP9 readthrough
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents naturally occurring readthrough transcription between the neighboring BMS1P2 (BMS1, ribosome biogenesis factor pseudogene 2) and AGAP9 (ArfGAP with GTPase domain, ankyrin repeat and PH domain 9) genes on chromosome 10. The readthrough transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Jan 2019]
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Genomic context

Location:
10q11.22
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (47501753..47553500, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (48393054..48444799, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (48185862..48237609)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902420 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47777655-47778618 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:48276917-48277572 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47168559-47169492 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:48257259-48257771 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:48255153-48256053 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:48254252-48255152 Neighboring gene annexin A8 Neighboring gene uncharacterized LOC124902421 Neighboring gene family with sequence similarity 25 member G Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3327 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3328 Neighboring gene RNA, 5S ribosomal pseudogene 312 Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 Neighboring gene BMS1 pseudogene 2 Neighboring gene glutamate dehydrogenase 1 pseudogene 6 Neighboring gene dual specificity phosphatase 8 pseudogene 1 Neighboring gene cathepsin L pseudogene 2

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_160414.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL591684
  2. NR_160415.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL591684

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    47501753..47553500 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    48393054..48444799 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)