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LOC112268276 uncharacterized LOC112268276 [ Homo sapiens (human) ]

Gene ID: 112268276, updated on 10-Oct-2023

Summary

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Gene symbol
LOC112268276
Gene description
uncharacterized LOC112268276
See related
Ensembl:ENSG00000229588
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
1q24.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (166165877..166340900)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (165511901..165686948)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene FAM78B antisense RNA 1 Neighboring gene family with sequence similarity 78 member B Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_946 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:166097641-166098142 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_966 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_978 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:166135105-166136007 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1508 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1509 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2025 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_1002 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1510 Neighboring gene microRNA 921 Neighboring gene EWS RNA binding protein 1 pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr1:166276066-166276742 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:166312727-166313227 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:166322051-166322217 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:166352300-166353120 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2026 Neighboring gene long intergenic non-protein coding RNA 1675 Neighboring gene flavin containing dimethylaniline monoxygenase 7, pseudogene Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:166546309-166547508 Neighboring gene flavin containing dimethylaniline monoxygenase 8, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    166165877..166340900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002958633.2 RNA Sequence

    Related
    ENST00000653824.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    165511901..165686948
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070820.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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