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PPP1CB-DT PPP1CB divergent transcript [ Homo sapiens (human) ]

Gene ID: 112267877, updated on 10-Oct-2023

Summary

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Official Symbol
PPP1CB-DTprovided by HGNC
Official Full Name
PPP1CB divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55829
See related
Ensembl:ENSG00000226833 AllianceGenome:HGNC:55829
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
2p23.2
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (28722268..28751756, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (28765946..28795372, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374384 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15523 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:28905611-28905817 Neighboring gene Sharpr-MPRA regulatory region 11701 Neighboring gene RNA, 5S ribosomal pseudogene 89 Neighboring gene uncharacterized LOC100505774 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:28945848-28946348 Neighboring gene MPRA-validated peak3641 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15524 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15525 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11311 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:28974622-28975266 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:28978040-28978253 Neighboring gene protein phosphatase 1 catalytic subunit beta Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11313 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11314 Neighboring gene speedy/RINGO cell cycle regulator family member A Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:29091169-29091684 Neighboring gene tRNA methyltransferase 61B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:29091685-29092199 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:29092829-29093353 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15527 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:29105260-29105423 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11315 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:29117677-29118300 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:29118301-29118922 Neighboring gene WD repeat domain 43 Neighboring gene small nucleolar RNA, C/D box 92

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    28722268..28751756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086259.1 RNA Sequence

  2. XR_007086258.1 RNA Sequence

  3. XR_007086260.1 RNA Sequence

  4. XR_007086261.1 RNA Sequence

  5. XR_939896.3 RNA Sequence

  6. XR_939886.3 RNA Sequence

    Related
    ENST00000653462.1

  7. XR_939893.3 RNA Sequence

  8. XR_001739359.2 RNA Sequence

  9. XR_001739362.2 RNA Sequence

  10. XR_002959377.1 RNA Sequence

  11. XR_007086262.1 RNA Sequence

  12. XR_001739360.2 RNA Sequence

  13. XR_939883.3 RNA Sequence

  14. XR_939884.3 RNA Sequence

  15. XR_939895.3 RNA Sequence

  16. XR_001739364.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    28765946..28795372 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071906.1 RNA Sequence

  2. XR_007071908.1 RNA Sequence

  3. XR_007071904.1 RNA Sequence

  4. XR_007071907.1 RNA Sequence

  5. XR_007071910.1 RNA Sequence

  6. XR_007071911.1 RNA Sequence

  7. XR_007071905.1 RNA Sequence

  8. XR_007071909.1 RNA Sequence

Nucleotide Protein
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