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LINC03126 long intergenic non-protein coding RNA 3126 [ Homo sapiens (human) ]

Gene ID: 112267871, updated on 21-Jan-2024

Summary

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Official Symbol
LINC03126provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3126provided by HGNC
Primary source
HGNC:HGNC:57013
See related
Ensembl:ENSG00000228549
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
1p36.13
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (16872226..16874096)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (16682655..16684524)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (17198721..17200591)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene tRNA-Val (anticodon CAC) 11-2 Neighboring gene tRNA-Gly (anticodon CCC) 1-2 Neighboring gene OCT4 hESC enhancer GRCh37_chr1:17193182-17193781 Neighboring gene putative protein FAM231BP Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:17197263-17198100 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:17198101-17198937 Neighboring gene tRNA-Glu (anticodon TTC) 3-1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17201146-17201709 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17201710-17202272 Neighboring gene RNA, U1 small nuclear 5, pseudogene Neighboring gene uncharacterized LOC107985101 Neighboring gene uncharacterized LOC105376805 Neighboring gene tRNA-Asn (anticodon GTT) 4-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables triplet codon-amino acid adaptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_160657.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX284668

  2. NR_160658.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX284668
    Related
    ENST00000668460.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    16872226..16874096
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791756.1 Reference GRCh38.p14 PATCHES

    Range
    1287377..1289247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    16682655..16684524
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases